CAMPAREE Documentation

User Guide

• Introduction
  • About
• Quick Start Guide
  • Installation
  • Baby Genome
  • Perform Test Run
  • Check Results
• Installation
  • Installation on PMACS Cluster for Developers
  • Requirements for Users

The API Reference

• The Controller Module
• Abstract Camparee Step
• Camparee Step Provider
• The Expression Pipeline
• Genome Alignment
• Indexing
• Variants Finding
• Intron Quantification
• Variants Compilation
• Gene Files Preparation
• Beagle
• Genome Builder
• Annotation Updater
• Annotation Info
• Transcriptome Preparation
• Allelic Imbalance Quantification
• Molecule Maker
• Camparee Utils

Indices and tables

• Index
• Module Index
• Search Page