CAMPAREE Documentation¶
User Guide¶
The API Reference¶
- CAMPAREE API
- The CAMPAREE Controller
- Expression Simulation Pipeline
- Genome Alignment & BAM Indexing Steps
- Variant Finder Step
- Intron Quantification Step
- Variant Compilation Step
- Beagle Step
- Genome Builder Step
- Update Annotation Step
- Transcriptome FASTA Preparation Step
- Kallisto Index Generation & Quantification Steps
- Bowtie2 Index Generation & Alignment Steps
- Transcript Quantification Step
- Allelic Imbalance Quantification Step
- Molecule Maker Step
- Annotation Info
- CAMPAREE Utils
- Abstract CAMPAREE Step
- CAMPAREE Step Provider
- CAMPAREE Constants